%0 Generic %A Omedo, Irene %D 2017 %T Dataset 1: Information on the 276 SNPs genotyped in 177 genes in P. falciparum parasite populations from The Gambia, Kilifi and Rachuonyo South. %U https://wellcomeopenresearch.figshare.com/articles/dataset/Dataset_1_Information_on_the_276_SNPs_genotyped_in_177_genes_in_P_falciparum_parasite_populations_from_The_Gambia_Kilifi_and_Rachuonyo_South_/4640707 %R 10.6084/m9.figshare.4640707.v1 %2 https://wellcomeopenresearch.figshare.com/ndownloader/files/7555474 %K Plasmodium falciparum %K malaria %K parasite mixing %K population structure %K micro-epidemiological %K Targeted Control %K principal component analysis %K genotyping %K Biological Sciences not elsewhere classified %X The columns contain the following information: study_location, site of sample collection; sample_id, unique sample identifier; gene_symbol, gene name (if available); chr_valid, chromosome; coord_valid= base position of SNP on chromosome; sequence_code, SNP name; assay_code, name of assay; rsnumber, unique SNP identifier in dbSNP; reference_allele, 3D7 reference allele, alternative_allele, alternative allele; single letter code, IUPAC code for SNPs; result, genotype call after processing; allele1, IUPAC code for allele 1; allele2, IUPAC code for allele 2; allele_ratio1, proportion of allele 1; allele_ratio2, proportion of allele 2; pass_fail, coding of SNP based on availability of valid genotype (pass) or lack of a valid genotype (fail). Geospatial data for homestead location is considered sensitive data and therefore cannot be made open access. However, it can be accessed through a request to our data governance committee, using the email address mmunene@uat/newsite. %I Wellcome Open Research